- reference genome in fasta format (may be gzipped) or an index (.mmi) of the reference genome
- long reads in fastq or fasta format (may be gzipped)
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> minimap2
- This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file.
- This is the alignment file generated by the app. It is in PAF format.