Minimap2_index_align-2.10
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- reference genome in fasta format (may be gzipped) or an index (.mmi) of the reference genome
- long reads in fastq or fasta format (may be gzipped)
Resources
Test Data
| Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> minimap2 |
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- index.mmi
- This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file.
- output
- This is the alignment file generated by the app. It is in PAF format.