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Exonerate 2.2.0

Exonerate 2.2.0

By Amanda Cooksey (Unlicensed)
May 11, 2021

Quick StartTo use exonerate 2.2.0, import your data in fasta format

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> exonerate

Input File(s)

Use htrt.human.protein.fasta from the directory above as query input.

Use htrt.human.dna.fasta from the directory above as target input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Use these parameters within the DE app interface
  • In the 'Gapped alignment options' section:
    • model: protein2genome
    • percent: 50
  • In the 'Output' section:
    • choose an output file name: out.txt
  • Leave all other parameters as default

Output File(s)

Expect out.txt as output.

Tool Source for App