LTR finder 1.07

Owned by Amanda Cooksey (Unlicensed)
Jun 21, 2021
1 min read

LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.

See https://github.com/xzhub/LTR_Finder for more info.

Quick Start

  • To use LTR finder load your input data in FASTA format.

Test Data

Icon

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> LTR_finder

Input File(s)

Only one file is necessary, a FASTA file 3ds_72.fa

Paramters

All parameters may be left as default.


Output Files

  • out

The default 'out' file will contain details of the matches including alignments (this is the 'full output').

Tool Source for App

https://github.com/xzhub/LTR_Finder