Samtools 1.7 bamtofastq
Samtools 1.7 bamtofastq
Converts a BAM file to a fastq file
Quick Start
- To use Samtools 1.7 bamtofastq, import your data in BAM format.
- Resources: https://github.com/samtools/samtools
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> samtools_bamtofastq
Input File(s)
Use ex1.bam from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Set the name for the output fastq file.
- Default parameters only, no further configuration needed.
Output File(s)
Expect a fastq files named as set in the output field.