Normalize By Median

Community rating: ?????

Filters a fastq/fasta file using digital normalization via median k-mer abundances.

Quick Start

To use Normalize By Median, import your data in fastq format.
Resources: https://github.com/dib-lab/khmer/blob/master/scripts/normalize-by-median.py and http://khmer-protocols.readthedocs.io/en/v0.8.2/index.html#

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ~~> Soapdenovo~~2-input

Input File(s)

Use fastq files from the directory above as test input.