Community rating: ?????
Repairs paired read files that have lost pairing on some reads because of preprocessing.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> rePair.
Use testqf_1.fastq and testqf_2.fastq from the directory above as test input.
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Expect 3 files named with input prefix as output. For the test case, the output files you will find in the example_data directory are named:
testqfRPR_p1.fastq testqfRPR_p2.fastq testqfRPR_up.fastq testqfRPR_p1.fastq