Spaces
Apps
Templates
Create
Discovery Environment Applications List
All content
Space settings
Content
Results will update as you type.
List of Applications
•
AAARF v 1.0.1
•
add column to file
•
add column to file2
•
Add GO to Blastp-uniprot output
•
Admixture
•
AgBase GOanna 2.1
•
ALLMAPS
•
ALLMAPS merge
•
ALLMAPS path
•
AllpathsLG 44837
•
AllpathsLG-small-genomes-44837
•
Annotate transcripts
•
AntEpiSeeker 2.0
•
appendUnclustered
•
Assembly Stats (assemblathon tool)
•
Assess Assembly vs whole genome
•
Ballgown-2.0
•
Bam to Counts (general)
•
BAM to Counts (named outputs)
•
bayesembler-1.2
•
Bayesian BiClustering
•
BCFtools 1.8 call
•
BCFtools 1.8 index
•
BCFtools 1.8 merge VCF
•
BCFtools 1.8 view
•
BEAST2 on CyVerse UK
•
BEAST on CyVerse UK
BEAST-2.1.3
•
BEDTools 2.26 fastaFromBed
•
BEDTools 2.26 slopBed
•
BEDTools 2.26.0 bamToBed
•
BEDTools 2.26.0 intersectBed
•
BEDTOOLS BAMtoFastq-2.26
•
BEDTools coverageBed
•
Bedtools Genome Coverage-BAM-2.26
•
BEDTools genomeCoverageBed
•
BEDTools maskFastaFromBed
•
Best Hit for Blat Output
•
Bismark
•
Bismark Genome Preparation
•
Bismark Methylation Extractor
•
Blast2Seqs
•
Blastdbcmd-batch-2.6.0
•
Blastdbcmd-single-2.6.0
•
Blastn-2.2.26
•
Blastn-2.6.0+
•
BLASTp UniProt
•
Blastp-2.2.29
•
Blastp-2.6.0+
•
BLASTX (HPC)
•
blat 36 (with options)
•
Blat (default)
•
BLAT_psl_to_SAM
•
Blat_with_BAM_output
•
Bowtie2-2.2.4 Bowtie2-Build indexer and aligner (HPC)
•
Bowtie2Build-2.2.4 indexer
•
Bowtie 1.2.2 build and map
•
Bowtie-2.2.1--Build-and-Map
•
Bowtie-Build
•
btrim
•
BuildICM-1.0.0-Dev
•
Bulk Blast 2 Sequences
•
BUSCO in the Discovery Environment
•
BUSCO-v2.0 in the Discovery Environment
•
BUSCO-v3.0 in the Discovery Environment
•
BWA 0.7.4 Divergent species
•
BWA 0.7.12 indexer aligner and mem (HPC)
•
BWA Aligner for Paired-End Illumina Reads
•
BWA Aligner for Single-End Illumina Reads
•
BWA aln 0.7.4
•
BWA index 0.7.4
•
BWA mem 0.7.15
•
BWA-0.7.4 non-model species
•
BWA_mem_longreads-0.7.15
•
bzip2 and bunzip2
CACE
•
Calling SNPs INDELs with SAMtools BCFtools
•
Canberra Distance
•
Canu 1.8
•
CD-HIT-est 4.6.8
•
CEGMA
•
CharaParser Learn
•
CharaParser Markup
•
Check covariance matrix file (CheckCvm)
•
Check standard GWAS files (CheckGwas)
•
Chromatra L
•
Chromatra T
•
Clean_fasta_header
•
ClustalW2
•
clusterProfiler
•
clusterReport
•
CNVnator-0.3.3
•
combine GAFs
•
Compress a directory with GNU tar-1.27.1
•
Compress files with gzip 1.6-2
•
Compress selected files with GNU tar
•
Compute Contig Statistics
•
Concatenate 2 Files-workflow edition.
•
Concatenate Multiple Files
•
construction genetic map
•
Convert bwt to arf
•
Convert SAM-to-sorted-BAM
•
ConvertTraitID 0.0.1
•
Copy with Scaffolding XML of DESeq2 (multifactorial pairwise comparisons)
•
Create BLAST database
•
Create BLAST database-2.6.0+
•
create dir
•
Create_BLAST_database-2.6.0__with_parse_seqids_option
•
Cuffcompare-2.2.1
•
Cuffdiff
•
Cuffdiff2
•
Cuffdiff2 with JS option
•
Cuffdiff2-16-way-max
•
CuffDiff 2.2.1a
•
Cufflinks
•
Cufflinks 2.2.1
•
Cufflinks_from_SAM-2.2.1 in DE
•
Cuffmerge2
•
Cuffmerge 2.2.1
•
curl-7.45.0
•
Cut Columns
•
cutadapt
•
DataHog
Show more below
Blogs
You‘re viewing this with anonymous access, so some content might be blocked.
Close
Discovery Environment Applications List
/
List of Applications
/
Blastdbcmd-batch-2.6.0
Blastdbcmd-batch-2.6.0
upendra kumar Devisetty
Owned by
upendra kumar Devisetty
Last updated:
Apr 10, 2018
Loading data...