Blastdbcmd-batch-2.6.0
Rationale:
Blastdbcmd-batch-2.6.0 is invoked using the following:
- Input (s)
- Blast Database
- Molecule type
- Sequence Identifier (batch/multiple)
- Output
- Default file name - BlastOutput
Please work through the documentation and add your comments on the bottom of this page, or email comments to support@cyverse.org. Thank you.
Test Data
The test data
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path: Community Data > iplantcollaborative > example_data > makeblastdb (/iplant/home/shared/iplantcollaborative/example_data/makeblastdb/)
Run Create_BLAST_database-2.6.0__with_parse_seqids_option as following:
- Input (s)
- Blast Database : /iplant/home/shared/iplantcollaborative/example_data/makeblastdb
- Molecule type: protein
- Sequence Identifier (batch): /iplant/home/shared/iplantcollaborative/example_data/batch_list.txt
- Output
- Default file name - BlastOutput containing the following output
>XP_019168153.1 PREDICTED: GDSL esterase/lipase 1-like [Ipomoea nil] MSSLYSYMYALALLGSLANP >XP_019168157.1 PREDICTED: myosin-12 isoform X2 [Ipomoea nil] MGTPVNIIVG
Tool Source for App