De-interlace paired fasta

De-interlace paired fasta

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Separate the read pairs in a paired fasta file, e.g. the output of the Khmer tools.

Quick Start

• To use De-interlace paired fasta, import your data in paired fasta format, as may result from Khmer processing.
• Background information on paired fasta files: http://khmer.readthedocs.org/en/latest/guide.html

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Deinterlace_paired_fasta.

Input File(s)

Use pair_i.fasta from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use the default settings

• Default parameters only, no further configuration needed.

Output File(s)

Expect two fasta files named according the settings made. For the test case, the output files you will find in the example_data directory are named Read1.fa and Read2.fa.