BEDTools coverageBed

Returns the depth and breadth of coverage of features from A on the intervals in B.

App Creator

Zhenyuan Lu

Quick Start

To use BEDTools coverageBed, import your data in BED format.
Resources: https://github.com/arq5x/bedtools2/releases

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use a.bed and b.bed from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_coverage_output as output.

Tool Source for App

https://github.com/arq5x/bedtools2/releases