BEDTools 2.26 fastaFromBed
BEDTools 2.26 fastaFromBed
Extract DNA sequences into a fasta file based on feature coordinates
Quick Start
- To use BEDTools 2.26 fastaFromBed, import your data in BED format.
- Resources: https://github.com/arq5x/bedtools2
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.
Input File(s)
Use chr8.fa and a.bed from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect bedtools_getfasta_output as output.