GLM

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General Linear Model analysis without population structure

Quick Start

To use GLM, import your data in HAPMAP format.
Resources: http://www.maizegenetics.net/tassel/

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> glm.

Input File(s)

Use mdp_genotype.hmp.txt and mdp_traits.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect two text files as output. For the test case, the output files you will find in the example_data directory is named glm1.txt and glm2.txt.

Tool Source for App

http://www.maizegenetics.net/tassel/