MACS
MACS 1.4.2
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Quick Start
- To use MACS 1.4.2, import your data in BAM/BED/BOWTE/ELAND/ELANDEXPORT/ELANDMULTI/ELANDMULTIPET/SAM format.
- Resources: http://liulab.dfci.harvard.edu/MACS/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> macs -> input.
Input File(s)
Use treatment_tags.bed (treatment) and input_tags.bed (control) from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect multiple files as output. For the test case, the output files are under under Community Data -> iplantcollaborative -> example_data -> macs ->output.