Create a sorted BAM file from a SAM alignment file
Create a position-sorted BAM file from a SAM alignment file
Use BowtieOutput.sam from the directory listed above.
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect a BAM file named after the input as output. For the test case, the output file you will find in the example_data directory is named sorted.bam.