QTL simulation workflow
QTL simulation workflow
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Automatic QTL Cartographer based workflow for simulating trait data with given linkage map.
Quick Start
- To use QTL simulation workflow, import your data in qtlcart format.
- Resources: http://statgen.ncsu.edu/qtlcart/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> qtlc_simulation_workflow.
Input File(s)
Use qtlcart.map from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect various text files as output. For the test case, the output files you will find in the example_data directory are named Prune.crb, qtlcart.log, qtlcart.rc, Rcross.cro, Rmap.map, and Rqtl.qtl.