gbsTags

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Quick Start

• To use gbsTags, import your data in either FastQ or Qseq format.
• Resources: http://www.maizegenetics.net/tassel/docs/TasselPipelineGBS.pdf

Test Data

Input File(s)

Use folder qseq and 61VBPAAXX_key.txt from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

• Default parameters only, no further configuration needed.

Output File(s)

Expect multiple folders and files as output. For the test case, the output files and folders you will find in the example_data/gbstags directory are named MergedTBT/myStudy.tbt.bin, tagCounts/10228283_61VBPAAXX_s_(1-7).cnt, tbt/10228283_61VBPAAXX_s_(1-7).tbt.bin, myMasterTags.cnt, and myMasterTags.fastq.fq.

Tool Source for App

• http://www.maizegenetics.net/tassel/docs/TasselPipelineGBS.pdf