maker2zff

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Pulls out MAKER gene models from the MAKER GFF3 output and convert them into ZFF format for SNAP training.

Quick Start

To use maker2zff, import your maker results in gff3 format.
Resources: http://gmod.org/wiki/MAKER_Tutorial_2012#MAKER_Accessory_Scripts

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> maker.

Input File(s)

Use contig-dpp-500-500.gff from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect genome.ann and genome.dna as output. For the test case, the output files you will find in the example_data directory are named genome.ann and genome.dna.

Tool Source for App

http://gmod.org/wiki/MAKER_Tutorial_2012#MAKER_Accessory_Scripts