Add GO to Blastp-uniprot output
- Roger Barthelson
Add GO to Blastp-uniprot output
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Takes a blastp output against a uniprot database, and provides a list of GO annotations that are linked to the blastp matches. Designed to be used with the Blastp a subset of uniprot app, ideally with the default setting of using uniprot entries that have experimentally derived annotations.
Quick Start
- To use Add GO to Blastp-uniprot output, import your data in blast tabular output format.
- Resources: http://www.ncbi.nlm.nih.gov/books/NBK279690/ and http://www.uniprot.org/ and http://www.agbase.msstate.edu/cgi-bin/tools/index.cgi.
Test Data
| Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Add_GO_to_Blastp-uniprot. |
Input File(s)
Use blastp_out.txt from the directory above as test input.
Parameters Used in App
Use the Default settings with the Test data (there are no parameters).
Output File(s)
The output file is always named goa_entries.srt.txt, which is .gaf format.
Tool Source for App
Script created at iPlant, and follows an Agbase workflow (http://www.agbase.msstate.edu/cgi-bin/tools/index.cgi).