Index BAM file
(SAMTOOLS-0.1.19) Index BAM file
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Samtools application to index a BAM file.
Quick Start
- To use (SAMTOOLS-0.1.19) Index BAM file, import your data in BAM format.
- Resources: https://github.com/samtools/samtools
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Index_BAM.
Input File(s)
Use sorted.bam from the directory above as test input.
Parameters Used in App
No parameters to set.
Output File(s)
Expect a file named after the bam file (e.g. *.bam, *.bam.bai) For the test case, the output file you will find in the example_data directory is named sorted.bam.bai