Peak Ranger_wig_1.18
Peak Ranger
Peakranger_wig_1.18 generates variable step format wiggle file.
Quick Start
- To use PeakRanger, upload your data in BED, BOWTIE, SAM, or BAM format.
- Resources: documentation
Test Data
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:
Community Data > iplantcollaborative > example_data > peakranger
Input File(s)
- Use AP2_REP2.sam as the "Data file:" Indicate that these are SAM format files using the drop-down box
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use these parameters within the DE app interface:
- Pad read coverage profiles - true
- Leave all other parameters their default values.
Output File(s)
- PeakRanger_wig_1.18 produces one output file when run with the example data and parameters. Results from the test case are as follows:
peakranger.wig