Creates index for bgzip compressed VCF/BCF files for random access. CSI (coordinate-sorted index) is created by default.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> BCFtools_index
Use SRR946914.vcf.gz from the directory above as test input.
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use all default parameters
Expect SRR946914.vcf.gz.csi as output.