STAR_2.4.0.1
STAR_2.4.0.1
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Quick Start
- To use STAR_2.4.0.1, import your data in fastq format, and an indexed reference contained in a single directory.
- Resources: https://github.com/alexdobin/STAR
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Star
Input File(s)
Use test_1.fastq from the directory above as test input, along with the indexed reference file. The input directory can have any name.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect a file named Aligned.out.sam as output.