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Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Star

Input File(s)

Use test_1.fastq from the directory above as test input, along with the indexed reference file. The input directory can have any name.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.


  • Default parameters only, no further configuration needed.

Output File(s)

Expect a file named Aligned.out.sam as output. 

Tool Source for App