STAR_2.4.0.1_GenerateGenomeIndex

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Quick Start

To use STAR_2.4.0.1_GenerateGenomeIndex, import your data in fasta format.
Resources: https://github.com/alexdobin/STAR

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Star

Input File(s)

Use NC_010473.fa from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

The whole directory for the job is your output. In the example data section, it has been renamed to Star_index.

Tool Source for App

https://github.com/alexdobin/STAR