Custom logoCustom icon
Templates

Discovery Environment Applications List

  • All content
  • Space settings
Results will update as you type.
  • •
    IDBA-UD 1.1.2
  • •
    Identification of unique homozygous SNPs in mutant
  • •
    IGVtools count
  • •
    Index BAM file
  • •
    Index BAM--get stats
  • •
    Index fasta file (Samtools 1.7 faidx)
  • •
    Infernal-1.1.2
  • •
    InStruct
  • •
    Interlace Paired FASTQ files
  • •
    InterproScan 5.36.75
  • •
    InterProScan_Results_Function
  • •
    IUTA-1.0 in the Discovery Environment
  • •
    Join multiple tab-delimited files
  • •
    Kallisto
  • •
    KBase data upload
  • •
    khmer 3.0.0a1 extract paired reads
  • •
    khmer 3.0.0a1 filter-abund
  • •
    khmer 3.0.0a1 load into counting
  • •
    khmer 3.0.0a1 normalize by median
  • •
    KOBAS annotate 3.0.3
  • •
    KOBAS annotate and identify 3.0.3
  • •
    KOBAS identify 3.0.3
  • •
    LASTAL-8.69
  • •
    LASTDB-8.69
  • •
    LD (Tassel4)
  • •
    Linux stream editor
  • •
    List contents of FAST5 file(s)
  • •
    LncTar-1.0
  • •
    MACS
  • •
    MAFFT 7.0.17
  • •
    Make new names for fasta sequences
  • •
    maker2jbrowse
  • •
    maker2zff
  • •
    Mapping illumina seq data Part 1
  • •
    MaxBin 2.2 in the Discovery Environment
  • •
    Medusa-1.6
  • •
    Megahit-1.0.6
  • •
    Meraculous 2.2.6
  • •
    Merge BAM files
  • •
    Merge SFF files-2.9
  • •
    Merge_htseq_count-1.0
  • •
    MergeG2P 0.0.2
  • •
    MERRA-AS instM_3d_ana_Np (Analyzed State, Meteorology Instantaneous Monthly)
  • •
    MERRA-AS tavg1_2d_lnd_Nx (Land related surface quantities)
  • •
    MetaGeneAnnotator-1.0.0
  • •
    MetaGeneMark GFF to IGB
  • •
    MetaPhyler-SR 0.115
  • •
    MetaQUAST-4.0 (denovo based) in DE
  • •
    MetaQUAST-4.0 (reference based) in DE
  • •
    MetaQUAST-4.3 (denovo based) in DE
  • •
    MetaQUAST-4.3 (reference based) in DE
  • •
    Mikado
  • •
    Miniasm 0.2_r168
  • •
    Minimap2_index-2.10
  • •
    Minimap2_index_align-2.10
  • •
    miRanda 3.3a
  • •
    miRDeep2 2.0.0.8
  • •
    miRDeep2 2.0.0.8 mapper
  • •
    miRDeep2 2.0.0.8 quantifier
  • •
    MLM 4.3.13
  • •
    MLM (Tassel4)
  • •
    MLM Workflow
  • •
    MLMM 0.0.2
  • •
    Modify_GFF_coordinates
  • •
    Molecular Dating with Penalized Likelihood
  • •
    mpileup
  • •
    MrBayes on CyVerse UK
  • •
    MrBayes_mpi_basic-3.2.3
  • •
    MUSCLE
  • •
    MUSCLE-3.8.31 on Stampede
  • •
    Mutant Identification 1
  • •
    mutant interval identification
  • •
    nanofilt 2.5.0
  • •
    Nanopolish vcf2fasta 0.10.2
  • •
    Nanopolish-call-methylation-0.10.2
  • •
    Nanopolish-eventalign-0.7.1
  • •
    Nanopolish-eventalign-0.10.2
  • •
    Nanopolish-extract-0.8.1
  • •
    Nanopolish-extract-0.10.2
  • •
    Nanopolish-index-0.8.1
  • •
    Nanopolish-index-0.10.2
  • •
    Nanopolish-variants-0.10.2
  • •
    nanoqc 0.91
  • •
    NCBI GenBank Import
  • •
    NCBI SRA Import
  • •
    NCBI SRA Import 1.2
  • •
    NCBI SRA Submission - BioProject Creation
  • •
    NCBI SRA Submission - BioProject Update
  • •
    NCBI SRA Submission Report Retrieval
  • •
    NCBI SRA to Solid Format (abi-dump)
  • •
    NCBI SRA Toolkit fastq-dump 2.1.9
  • •
    NCBI SRA Toolkit fastq-dump 2.3.4
  • •
    NCBI SRA Toolkit fastq-dump 2.8.1
  • •
    Newbler
  • •
    Newbler 2.6.0
  • •
    Ninja
  • •
    non-unique filter
  • •
    Normalize By Median
  • •
    NPUTE-0.0.1
  • •
    Numeric Evaluation of a Data Column
  • •
    NumericalTransform 4.3.14
  • •
    Oases 0.2.08
  • •
    Ontologizer
  • •
    OposSOM-2.0.1-biomart
  • •
    OrthoMCL v1.4
  • •
    PAGE
  • •
    PAML
  • •
    ParaAT 2.0
  • •
    parallel-fastq-dump-0.6.1
  • •
    parallel-fastq-dump-multi-0.6.5
  • •
    Parse Blast Report
  • •
    parseBlastBpo
  • •
    Parser-3.0.20
  • •
    PcPipe 1.0.0
  • •
    Peak Ranger
  • •
    Peak Ranger_ranger_1.18
  • •
    Peak Ranger_wig_1.18
  • •
    Peak Ranger_wigpe_1.18
  • •
    PEAR-0.9.6
  • •
    PepMOD
  • •
    PGDSpider tool for data conversion
  • •
    Photometry-pipeline-v1.0
  • •
    PhyML
  • •
    Picard Preprocess-1.98
  • •
    Picard-MarkDuplicates-2.7.1 in the Discovery Environment
  • •
    pigz-2.3.4 (Compress multiple files with gzip parallely)
  • •
    PK Unzip
  • •
    Platypus-0.7.9.5
  • •
    PLINK
  • •
    PLINK 1.90b4
  • •
    PLINK 1.90b4 Conversion
  • •
    PLINK 2 AntEpiSeeker Conversion
  • •
    PLINK Conversion
  • •
    Polymarker
  • •
    population genomics analysis flow
  • •
    Porechop 0.2.3
  • •
    Poretools combine 0.6.1a1
  • •
    Poretools events 0.6.1a1
  • •
    Poretools fasta 0.6.1a1
  • •
    Poretools fastq 0.6.1a1
  • •
    Poretools index 0.6.1a1