FASTX fastq to fasta 0.0.14

This app converts

Quick Start

• To use Fastx fastq to fasta, import your data in fastq format.
• Resources: http://hannonlab.cshl.edu/fastx_toolkit/commandline.html#fastx_collapser_usage

Test Data

Input File(s)

Use test_1.fastq from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

• Default parameters only, no further configuration needed.

Output File(s)

Expect a fasta file as output. For the test case, the output file you will find in the example_data directory is named testout.fa.

Tool Source for App

• http://hannonlab.cshl.edu/fastx_toolkit/download.html