Poretools fasta 0.6.1a1
Poretools fasta 0.6.1a1
Extract FASTA sequences from a set of FAST5 files
Quick Start
To use Poretools fasta 0.6.1a1, import your data in FAST5
Resources: https://poretools.readthedocs.io/en/latest/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> poretools
Input File(s)
Use the following files from the directory above as test input:
- nanopore2_R9_MinKNOW_0.51_Ecoli_K12_MG1655_lambda_1004_1_ch106_read73_strand.fast5
- nanopore2_R9_MinKNOW_0.51_Ecoli_K12_MG1655_lambda_1004_1_ch112_read42883_strand.fast5
- nanopore2_R9_MinKNOW_0.51_Ecoli_K12_MG1655_lambda_2258_1_ch118_read1032_strand.fast5
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use these parameters within the DE app interface:
- Set the output file name to 'fasta_output.fasta'
- Leave all other parameters as default
Output File(s)
Expect fasta_output.fasta as output.