vcfutils.pl varFilter
vcfutils.pl varFilter
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filtering short variants
Quick Start
- To use vcfutils.pl varFilter, import your data in VCF format.
- Resources: http://samtools.sourceforge.net/mpileup.shtml
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Samtools_mpileup.
Input File(s)
Use bcftools_view_output from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect vcfutils_varFilter_output as output.