Porechop is a tool for finding and removing adapters from Oxford Nanopore reads.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> porechop
Use the following files from the directory above as test input:
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use these parameters within the DE app interface:
- Set the output file name to: testdata_output.fastq
- Leave all other parameters as default
Expect testdata_output.fastq as output.