Porechop 0.2.3
Porechop 0.2.3
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads.
Quick Start
To use Porechop, import your data in FASTA or FASTQ format
Resources: https://github.com/rrwick/Porechop
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> porechop
Input File(s)
Use the following files from the directory above as test input:
- SRR6059708_1000000.fastq
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use these parameters within the DE app interface:
- Set the output file name to: testdata_output.fastq
- Leave all other parameters as default
Output File(s)
Expect testdata_output.fastq as output.