FastQC 0.10.1 (multi-file)
FastQC 0.10.1 (multi-file)
App Creator
Matthew Vaughn
Quick Start
- To use FastQC 0.10.1 (multi-file), import your data in FASTQ format.
- Resources: FastQC
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> fastqc.
Full Path: /iplant/home/shared/iplantcollaborative/example_data/fastqc
Input File(s)
Use SRR070572_hy5.fastq from the directory above as test input.
Parameters Used in App
Only the data file needs to be loaded to run this app.
Output File(s)
Expect a zipped folder containing all of the output. Inside of that folder, there are two folders: Icons and Images. The overall summary is found in a file entitled: SRR070572_hy5.html. Opening this .html file will open up a browser tab and display all output figures.
Related Tutorials
Evaluate and Pre-Process Sequencing Reads (Workflow Tutorial)