FastQC 0.10.1 (multi-file)


FastQC 0.10.1 (multi-file)

App Creator

Matthew Vaughn

Quick Start

  • To use FastQC 0.10.1 (multi-file), import your data in FASTQ  format.
  • Resources: FastQC

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> fastqc.

Full Path: /iplant/home/shared/iplantcollaborative/example_data/fastqc

Input File(s)

Use SRR070572_hy5.fastq from the directory above as test input.

Parameters Used in App

Only the data file needs to be loaded to run this app.

Output File(s)

Expect a zipped folder containing all of the output. Inside of that folder, there are two folders: Icons and Images. The overall summary is found in a file entitled: SRR070572_hy5.html. Opening this .html file will open up a browser tab and display all output figures.

Related Tutorials

Evaluate and Pre-Process Sequencing Reads (Workflow Tutorial)

Tool Source for App