FASTA Minimum Size Filter

Owned by soliver
Last updated: Jun 03, 2015 by kkennedy
1 min read

FASTA Minimum Size Filter

FASTA Minimum Size Filter applies a size filter to a FASTA file, excluding the sequence records smaller than a specified base pair size.

Quick Start

  • To use FASTA Minimum Size Filter, upload your data in FASTA format.
  • Resources: None

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > fasta_minimum_size_filter

Input File(s)

Use euc-k27-1.fa as test data.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Minimum Length - 300

Output File(s)

Expect a FASTA file 'fasta_filter_by_length_out.fa' as output.

Tool Source for App

  • None