Merge BAM files
- de-confluence
- amcooksey (Unlicensed)
- Branden Lau (Unlicensed)
- Roger Barthelson
Owned by de-confluence
Samtools 1.7 Merge BAM-files
Merge sorted BAM files into a single BAM file.
Quick Start
- To use Samtools 1.7 Merge BAM files, import your data in BAM format.
- Resources:https://github.com/samtools/samtools
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> MergeBAMfiles .
Input File(s)
Use TrmSos_1644_s_1_1.fq.bam and TrmSos_1651_s_2_2.fq.bam from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect the an output according to what you set the output name. For the test case, the output file you will find in the example_data directory is named MergedOut.bam.