Graphmap index 0.5.2
Graphmap index 0.5.2
This App runs Graphmap (version 0.5.2):
A highly sensitive and accurate mapper for long, error-prone reads
App Creator
Amanda Cooksey
Quick Start
Graphmap requires the following:
reference genome in fasta format (may be gzipped)
Resources
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Graphmap
Input File(s)
Reference genome fasta file
GCF_000240185.1_ASM24018v2_genomic.fna
Parameters Used in App
In the Input section choose the reference genome fasta input file: 'GCF_000146045.2_R64_genomic.fna.gz'.
Output File(s)
GCF_000146045.2_R64_genomic.fna.gmidx
This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file