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Graphmap index 0.5.2
Graphmap index 0.5.2
Graphmap index 0.5.2
This App runs Graphmap (version 0.5.2):
A highly sensitive and accurate mapper for long, error-prone reads
App Creator
Amanda Cooksey
Quick Start
Graphmap requires the following:
- reference genome in fasta format (may be gzipped)
Resources
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Graphmap
Input File(s)
- Reference genome fasta file
- GCF_000240185.1_ASM24018v2_genomic.fna
- GCF_000240185.1_ASM24018v2_genomic.fna
Parameters Used in App
- In the Input section choose the reference genome fasta input file: 'GCF_000146045.2_R64_genomic.fna.gz'.
Output File(s)
- GCF_000146045.2_R64_genomic.fna.gmidx
- This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file
- This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file
Tool Source for App
, multiple selections available,