Best Hit for Blat Output
Best Hit for Blat Output
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This app uses tools that accompany blat, pslReps and pslSort.
It chooses the better alignments from the psl output file from Blat.
Quick Start
- To use Best Hit for Blat Output, import your data in psl format.
- Resources: https://users.soe.ucsc.edu/~kent/src/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Best_Hit_for_Blat_Output
Input File(s)
Use neo.psl from the directory above as test input.
Parameters Used in App
- Default parameters only, but change the output name for the psl to neo_best.psl.
Output File(s)
Expect a psl as output. For the test case, the output file you will find in the example_data directory is named neo_best.psl.