Fastx Collapser removes redundancy from read files in fastq or fasta format.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> fastx_collapser
Use test_1.fastq from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect a fasta file as output. For the test case, the output file you will find in the example_data directory is named collapsed.fq.