Fastx Collapser

Fastx Collapser

Fastx Collapser removes redundancy from read files in fastq or fasta format.

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> fastx_collapser

Input File(s)

Use test_1.fastq from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a fasta file as output. For the test case, the output file you will find in the example_data directory is named collapsed.fq.

Tool Source for App