Prinseq-Graph-noPCA evaluate reads
Prinseq graph complete workflow
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Complete workflow to create graphs relating to the quality of reads in a fastq file. Similar to FastQC
Quick Start
- To use Prinseq graph complete workflow, import your data in fastq format.
- Resources: http://prinseq.sourceforge.net
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> prinseq_graph
Input File(s)
Use
hy5_rep1.fastq from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use the default parameters.
Output File(s)
Expect an html file as output. For the test case, the output file you will find in the example_data directory is named hy5graphtest.html.