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gbsMergeSNP_TASSEL 3.0.133

gbsMergeSNP_TASSEL 3.0.133

By de-confluence
Jul 22, 2016

gbsMergeSNP_TASSEL 3.0.133

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Merges all .tbt.bin and/or (preferably) .tbt.byte files present in the input directory and all of its subdirectories.

Quick Start

  • To use gbsMergeSNP_TASSEL 3.0.133, import your data in Hapmap and TBT format.
  • Resources: Genotype-by-Sequencing

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gbs_workflow -> output.

Input File(s)

Use unfilt and mergedTBT from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a folder of text files as output. For the test case, the output folder you will find in the example_data directory is named mergedSNP.

Tool Source for App