SnapATAC

SnapATAC (Single Nucleus Analysis Pipeline for ATAC-seq) is a fast, accurate and comprehensive method for analyzing single cell ATAC-seq datasets.

App Creator

Reetu Tuteja

Quick Start

• Please use the following username and password for logging into the app:

  
  Username: rstudio
  Password: rstudio1
  
  
  

• Test data for SnapATAC appears in the Discovery Environment in the Data window under /iplant/home/shared/iplantcollaborative/example_data/SnapATAC_sampledata

  
  
  

• Resources:https://github.com/r3fang/SnapATAC

Video Tutorial

https://www.loom.com/share/65badfcec3d841768bd1c9b4b4ae9f91