Community rating: ?????

An R script for simple gwassing. Adapted from the work of researchers at NIAB.

Quick Start

Test Data

Test data for this app are temporarily not available in the Discovery Environment.

Input File(s)

A genotype and at least one phenotype file with headers are required. A map file may be additionally provided (that is required if you wish to print a plot).

Parameters Used in App

The phenotype to associate with SNPs is the only required parameter.

The user can additionally include a phenotype as mixed effects, and choose if to create and save plot and intermediate files.

Output File(s)

The main output file will be a SNP association CSV file. There may be an association plot and intermediate tables depending on the chosen options.

Tool Source for App