SnapATAC

Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data.

App Creator

Reetu Tuteja

Quick Start

• Please use the following username and password for logging into the app:

  
  Username: rstudio
  Password: rstudio
  
  
  

• Test data for Seurat appears in the Discovery Environment in the Data window under /iplant/home/shared/iplantcollaborative/example_data/seurat

• Resources: https://satijalab.org/seurat/

  Integrating single-cell transcriptomic data across different conditions, technologies, and species https://www.nature.com/articles/nbt.4096

  Comprehensive Integration of Single-Cell Data https://www.cell.com/cell/fulltext/S0092-8674(19)30559-8

Video Tutorial