combine GAFs

Combine GAFs

Combines gene association files (GAF) from InterProScan ( with XML parser) and GOanna.

Quick Start

Combine GAFs accepts two GAF files.
Resources: https://github.com/AgBase/combine_GAFs, https://agbase-docs.readthedocs.io/en/latest/

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> combine_GAFs

Input File(s)

Use CFLO_1.fa_gaf.txt and clfo1_v_insecta_goanna_gaf.tsv from the directory above as test inputs.

Parameters Used in App

Use the Default parameters with the Test data.

Fill in the the Output File Name filed with a suitable name for you output file.

Output File(s)

complete_CLFO_gaf.tsv is the combined GAF file

Tool Source for App

https://github.com/AgBase/combine_GAFs