IDBA-UD 1.1.2

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Variable kmer metagenomic assembler

Quick Start

To use IDBA_UD-1.1.2, import your data in fasta format.
Resources: http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> idba_ud > lacto-genus

Input File(s)

Use 220668.read-10 from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect a text file named after the input files as output. For the test case, the output file you will find in the example_data directory is named 220668.fa.

Tool Source for App

http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/