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Rationale and Background
pigz-2.3.4 (Parallel Implementation of Gzip) is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressed
- A CyVerse account. (Register for an CyVerse account here - user.cyverse.org)
- Mandatory arguments
- Input - One or more files that needs to be compressed
- Output folder - Name of the output folder where the compressed files will be placed
- Optional Parameters:
- Compress faster : Indicates the fastest compression method (less compression)
- Compress better : indicates the slowest compression method (best compression)
The following test data are provided for testing HISAT2 in here - /iplant/home/shared/iplantcollaborative/example_data/compress_w_gzip/inputs:
Successful execution of the HISAT2-index-align assessment pipeline will create a directory named output. The directory will contain compressed file or files