miRDeep2 22.214.171.124 quantifier
This app maps deep sequencing reads to predefined miRNA precursors and determines by that the expression of the corresponding miRNAs.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> miRDeep2
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Leave all parameters as default.
For the test case, the output file you will find in the example_data directory is miRNAs_expressed_all_samples_1532534506.csv