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List of Applications
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AAARF v 1.0.1
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add column to file
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add column to file2
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Add GO to Blastp-uniprot output
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Admixture
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AgBase GOanna 2.1
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ALLMAPS
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ALLMAPS merge
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ALLMAPS path
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AllpathsLG 44837
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AllpathsLG-small-genomes-44837
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Annotate transcripts
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AntEpiSeeker 2.0
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appendUnclustered
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Assembly Stats (assemblathon tool)
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Assess Assembly vs whole genome
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Ballgown-2.0
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Bam to Counts (general)
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BAM to Counts (named outputs)
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bayesembler-1.2
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Bayesian BiClustering
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BCFtools 1.8 call
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BCFtools 1.8 index
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BCFtools 1.8 merge VCF
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BCFtools 1.8 view
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BEAST2 on CyVerse UK
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BEAST on CyVerse UK
BEAST-2.1.3
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BEDTools 2.26 fastaFromBed
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BEDTools 2.26 slopBed
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BEDTools 2.26.0 bamToBed
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BEDTools 2.26.0 intersectBed
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BEDTOOLS BAMtoFastq-2.26
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BEDTools coverageBed
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Bedtools Genome Coverage-BAM-2.26
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BEDTools genomeCoverageBed
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BEDTools maskFastaFromBed
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Best Hit for Blat Output
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Bismark
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Bismark Genome Preparation
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Bismark Methylation Extractor
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Blast2Seqs
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Blastdbcmd-batch-2.6.0
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Blastdbcmd-single-2.6.0
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Blastn-2.2.26
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Blastn-2.6.0+
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BLASTp UniProt
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Blastp-2.2.29
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Blastp-2.6.0+
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BLASTX (HPC)
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blat 36 (with options)
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Blat (default)
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BLAT_psl_to_SAM
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Blat_with_BAM_output
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Bowtie2-2.2.4 Bowtie2-Build indexer and aligner (HPC)
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Bowtie2Build-2.2.4 indexer
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Bowtie 1.2.2 build and map
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Bowtie-2.2.1--Build-and-Map
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Bowtie-Build
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btrim
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BuildICM-1.0.0-Dev
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Bulk Blast 2 Sequences
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BUSCO in the Discovery Environment
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BUSCO-v2.0 in the Discovery Environment
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BUSCO-v3.0 in the Discovery Environment
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BWA 0.7.4 Divergent species
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BWA 0.7.12 indexer aligner and mem (HPC)
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BWA Aligner for Paired-End Illumina Reads
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BWA Aligner for Single-End Illumina Reads
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BWA aln 0.7.4
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BWA index 0.7.4
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BWA mem 0.7.15
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BWA-0.7.4 non-model species
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BWA_mem_longreads-0.7.15
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bzip2 and bunzip2
CACE
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Calling SNPs INDELs with SAMtools BCFtools
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Canberra Distance
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Canu 1.8
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CD-HIT-est 4.6.8
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CEGMA
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CharaParser Learn
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CharaParser Markup
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Check covariance matrix file (CheckCvm)
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Check standard GWAS files (CheckGwas)
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Chromatra L
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Chromatra T
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Clean_fasta_header
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ClustalW2
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clusterProfiler
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clusterReport
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CNVnator-0.3.3
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combine GAFs
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Discovery Environment Applications List
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AntEpiSeeker 2.0
AntEpiSeeker 2.0
de-confluence
kamichels
NicoleH
pawalker123
Owned by
de-confluence
Last updated:
Jul 08, 2013
by
kamichels
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