Trinity normalize by k-mer coverage r11.10.13

Trinity normalize by k-mer coverage 11.10.13

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Perform in silico normalization of read data before running Trinity

Quick Start

To use Trinity normalize by k-mer coverage11.10.13, import your data in fastq or fasta format.
Resources: http://trinityrnaseq.sourceforge.net/trinity_insilico_normalization.html

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> trinity_normalize.

Input File(s)

Use B_antarctica1.fq and B_antarctica2.fq from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect .normalized... files named after the input files as output. For the test case, the output file you will find in the example_data directory.

Tool Source for App

http://trinityrnaseq.sourceforge.net/trinity_insilico_normalization.html