Published Mar 24, 2020

gffread-2.2.1 convert between GFF3 and GTF2

By Amanda Cooksey (Unlicensed)

convert GFF3 to GTF2 or GTF2 to GFF3

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->gffread_convert_gff_gtf

Input Files

Use:

  • chloroplast_Arabidopsis_thaliana_thale_cress_dsgid7046.gff

 

Parameters

Check the box 'convert to GTF2

 

Output Files

This analysis should generate one input file:

  • gffread.gff

Tool Source for App

http://ccb.jhu.edu/software/stringtie/gff.shtml

 

 

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