vcftools-stats 0.1.16

vcftools-stats outputs some basic statistics: the number of SNPs, indels, etc.

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools

Input Files


  • 20150518-173953-GVCF_Chr01.vcf.gz



There are no required parameters.


Output Files

This analysis should generate several output files:

  • output.counts

  • output.dump

  • output.indels

  • output.legend

  • output.private

  • output.qual-tstv

  • output.samples-tstv

  • output.shared

  • output.snps

  • output.tstv

Tool Source for App