vcftools-stats 0.1.16
vcftools-stats outputs some basic statistics: the number of SNPs, indels, etc.
Quick Start
To use vcftools-stats 0.1.16, import your data in vcf format (may be gzipped)
Resources: https://vcftools.github.io/perl_module.html#vcf-stats
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools
Input Files
Use:
20150518-173953-GVCF_Chr01.vcf.gz
Parameters
There are no required parameters.
Output Files
This analysis should generate several output files:
output.counts
output.dump
output.indels
output.legend
output.private
output.qual-tstv
output.samples-tstv
output.shared
output.snps
output.tstv
Tool Source for App
https://vcftools.github.io/perl_module.html#vcf-stats
, multiple selections available,
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