vcftools-compare 0.1.16

Compares positions in two or more VCF files and outputs the numbers of positions contained in one but not the other files; two but not the other files, etc, which comes handy when generating Venn diagrams.

Quick Start

To use vcftools-compare 0.1.16, import your data in vcf.gz format along with the corresponding tbi index files
Resources: https://vcftools.github.io/perl_module.html#vcf-compare

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools

Input Files

Use:

20150518-173953-GVCF_Chr01.vcf.gz
20150518-173953-GVCF_Chr01.vcf.gz.tbi
20150518-173953-GVCF_Chr02.vcf.gz
20150518-173953-GVCF_Chr02.vcf.gz.tbi

Parameters

There are no required parameters.

Output Files

This analysis should generate one output file; a merged VCF file made from the input files:

compare_output.txt

Tool Source for App

https://vcftools.github.io/perl_module.html#vcf-compare