vcftools-concat 0.1.16

Concatenates VCF files (for example split by chromosome). Note that the input and output VCFs will have the same number of columns, the script does not merge VCFs by position

Quick Start

To use vcftools-concat 0.1.16, import your data in vcf format (may be gzipped)
Resources: https://vcftools.github.io/perl_module.html#vcf-concat

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools

Input Files

Use:

20150518-173953-GVCF_Chr01.vcf.gz
20150518-173953-GVCF_Chr02.vcf.gz

Parameters

There are no required parameters.

Output Files

This analysis should generate one output file; a merged VCF file made from the input files:

merged.vcf

Tool Source for App

https://vcftools.github.io/perl_module.html#vcf-concat