vcftools-concat 0.1.16

Concatenates VCF files (for example split by chromosome). Note that the input and output VCFs will have the same number of columns, the script does not merge VCFs by position 

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools

Input Files


  • 20150518-173953-GVCF_Chr01.vcf.gz

  • 20150518-173953-GVCF_Chr02.vcf.gz



There are no required parameters.


Output Files

This analysis should generate one output file; a merged VCF file made from the input files:

  • merged.vcf

Tool Source for App