Takes multiple overlapping pre-phased chunks and concatenates them into one VCF using heterozygous calls from the overlaps to determine correct phase.
To use vcftools-phased-join 0.1.16, import your data in vcf format (may be gzipped) along with the corresponding tbi index files
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools
There are no required parameters.
This analysis should generate two output files; a phased-join VCF file made from the input files and a .plog file with summary statistics.