rRNAFilter 1.1
rRNAFilter 1.1
rRNAFilter is a novel taxonomy-independent approach which can accurately and rapidly filter rRNA sequences from metatranscirptomes without the aid of reference rRNA databases.
Quick Start
- To use rRNAFilter 1.1, import your data in FASTA format.
- Resources: http://hulab.ucf.edu/research/projects/rRNAFilter/rRNAFilter.html
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> rRNAFilter
Input File(s)
Use reads_collapsed.fa from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- All parameters may be left as default
Output File(s)
Expect the following files as output.
- reads_collapsed.fa_non-rRNA
- reads_collapsed.fa_rRNA